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1

Integrating mutation data and structural analysis of the TP53 tumor-suppressor protein

Andrew C.R. Martin, Angelo M. Facchiano, Alison L. Cuff, Tina Hernandez-Boussard, Magali Olivier, Pierre Hainaut, Janet M. Thornton

Journal:

Year:

2002

Language:

english

File:

PDF, 678 KB

english, 2002

2

The amino acid sequence of a protein from wheat kernel closely related to proteins involved in the mechanisms of plant defence

Carla Caruso, Carlo Caporale, Elia Poerio, Angelo Facchiano, Vincenzo Buonocore

Journal:

The Protein Journal

Year:

1993

Language:

english

File:

PDF, 627 KB

english, 1993

3

Transglutaminases and their substrates in biology and human diseases: 50

Angelo Facchiano, Francesco Facchiano

Journal:

Year:

2009

Language:

english

File:

PDF, 282 KB

english, 2009

4

Gene expression monitoring in hormone-responsive human breast cancer cells during estrogen-induced cell cycle progression

Cicatiello, Luigi, Facchiano, Angelo, Calogero, Raffaele, De Bortoli, Michele, Bresciani, Francesco, Weisz, Alessandro

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 28 KB

english, 2001

5

Molecular cloning, differential expression and 3D structural analysis of the MHC class-II β chain from sea bass (Dicentrarchus labrax L.)

Francesco Buonocore, Elisa Randelli, Daniela Casani, Susan Costantini, Angelo Facchiano, Giuseppe Scapigliati, Renè J.M. Stet

Journal:

Fish & Shellfish Immunology

Year:

2007

Language:

english

File:

PDF, 563 KB

english, 2007

6

FAST (Flexible Analysis by Software Tool) and CHAMP (CHemico-physical AMinoacidic Parameter data bank): a new tool to investigate protein structure

Facchiano, Angelo, Facchiano, Antonio, Facchiano, Francesco, Ragone, Raffaele, Colonna, Giovanni

Journal:

Year:

1989

Language:

english

File:

PDF, 386 KB

english, 1989

7

Experimental Evidence and In Silico Identification of Tryptophan Decarboxylase in Citrus Genus

De Masi, Luigi, Castaldo, Domenico, Pignone, Domenico, Servillo, Luigi, Facchiano, Angelo

Journal:

Year:

2017

Language:

english

File:

PDF, 812 KB

english, 2017

8

Structure and Ligands Interactions of Citrus Tryptophan Decarboxylase by Molecular Modeling and Docking Simulations

Facchiano, Angelo, Pignone, Domenico, Servillo, Luigi, Castaldo, Domenico, De Masi, Luigi

Journal:

Year:

2019

Language:

english

File:

PDF, 2.47 MB

english, 2019

9

A review on drug repurposing applicable to COVID-19

Dotolo, Serena, Marabotti, Anna, Facchiano, Angelo, Tagliaferri, Roberto

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 665 KB

2020

10

Probing the modelled structure of Wheatwin1 by controlled proteolysis and sequence analysis of unfractionated digestion mixtures

Carlo Caporale, Carla Caruso, Angelo Facchiano, Monica Nobile, Luca Leonardi, Laura Bertini, Giovanni Colonna, Vincenzo Buonocore

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 432 KB

english, 1999

11

Assessment of the conformational features of vasoactive intestinal peptide in solution by limited proteolysis experiments

Paola Stiuso, Anna Marabotti, Angelo Facchiano, Marilena Lepretti, Alessandra Dicitore, Pasquale Ferranti, Maria Cartenì

Journal:

Year:

2006

Language:

english

File:

PDF, 261 KB

english, 2006

12

Comparative gene expression profiling reveals partially overlapping but distinct genomic actions of different antiestrogens in human breast cancer cells

Claudio Scafoglio, Concetta Ambrosino, Luigi Cicatiello, Lucia Altucci, Mario Ardovino, Paola Bontempo, Nicola Medici, Anna Maria Molinari, Angela Nebbioso, Angelo Facchiano, Raffaele A. Calogero, Ran

Journal:

Journal of Cellular Biochemistry

Year:

2006

Language:

english

File:

PDF, 271 KB

english, 2006

13

New computational strategy to analyze the interactions of ERα and ERβ with different ERE sequences

Anna Marabotti, Giovanni Colonna, Angelo Facchiano

Journal:

Journal of Computational Chemistry

Year:

2007

Language:

english

File:

PDF, 471 KB

english, 2007

14

Energy-based prediction of amino acid-nucleotide base recognition

Anna Marabotti, Francesca Spyrakis, Angelo Facchiano, Pietro Cozzini, Saverio Alberti, Glen E. Kellogg, Andrea Mozzarelli

Journal:

Journal of Computational Chemistry

Year:

2008

Language:

english

File:

PDF, 738 KB

english, 2008

15

Molecular identification of ERα-positive breast cancer cells by the expression profile of an intrinsic set of estrogen regulated genes

Alessandro Weisz, Walter Basile, Claudio Scafoglio, Lucia Altucci, Francesco Bresciani, Angelo Facchiano, Piero Sismondi, Luigi Cicatiello, Michele De Bortoli

Journal:

Journal of Cellular Physiology

Year:

2004

Language:

english

File:

PDF, 514 KB

english, 2004

16

Effect of a Weak Electrolyte on the Critical Micellar Concentration of Sodium Dodecyl Sulfate

Ciro Esposito, Patrizia Colicchio, Angelo Facchiano, Raffaele Ragone

Journal:

Journal of Colloid and Interface Science

Year:

1998

Language:

english

File:

PDF, 95 KB

english, 1998

17

PreSSAPro: A software for the prediction of secondary structure by amino acid properties

Susan Costantini, Giovanni Colonna, Angelo M. Facchiano

Journal:

Computational Biology and Chemistry

Year:

2007

Language:

english

File:

PDF, 540 KB

english, 2007

18

Understanding the role of the topology in protein folding by computational inverse folding experiments

Antonio Mucherino, Susan Costantini, Daniela di Serafino, Marco D’Apuzzo, Angelo Facchiano, Giovanni Colonna

Journal:

Computational Biology and Chemistry

Year:

2008

Language:

english

File:

PDF, 779 KB

english, 2008

19

Standardized sample preparation phases for a quantitative measurement of plasma peptidome profiling by MALDI-TOF

Marco D'Imperio, Anna Della Corte, Angelo Facchiano, Michela Di Michele, Gabriella Ferrandina, Maria B. Donati, Domenico Rotilio

Journal:

Journal of Proteomics

Year:

2010

Language:

english

File:

PDF, 675 KB

english, 2010

20

In vitro phosphorylation of high molecular weight glutenin subunits from wheat endosperm

Angelo M Facchiano, Giovanni Colonna, Emilio Chiosi, Gennaro Illiano, Annamaria Spina, Domenico Lafiandra, Francesco Buonocore

Journal:

Plant Physiology and Biochemistry

Year:

1999

Language:

english

File:

PDF, 195 KB

english, 1999

21

Transglutaminase-mediated polyamination of vasoactive intestinal peptide (VIP) Gln16 residue modulates VIP/PACAP receptor activity

Salvatore De Maria, Salvatore Metafora, Vittoria Metafora, Francesco Morelli, Patrick Robberecht, Magalì Waelbroeck, Paola Stiuso, Alfredo De Rosa, Anna Cozzolino, Carla Esposito, Angelo Facchiano, Ma

Journal:

Year:

2002

Language:

english

File:

PDF, 711 KB

english, 2002

22

Structural properties of the protein SV-IV

Carlo Caporale, Carla Caruso, Giovanni Colonna, Angelo Facchiano, Pasquale Ferranti, Gianfranco Mamone, Gianluca Picariello, Flavia Colonna, Salvatore Metafora, Paola Stiuso

Journal:

Year:

2004

Language:

english

File:

PDF, 314 KB

english, 2004

23

The self-association of protein SV-IV and its possible functional implications

Paola Stiuso, Salvatore Metafora, Angelo M. Facchiano, Giovanni Colonna, Raffaele Ragone

Journal:

Year:

1999

Language:

english

File:

PDF, 583 KB

english, 1999

24

Evaluation of the structural quality of modeled proteins by using globularity criteria

Susan Costantini, Angelo M Facchiano, Giovanni Colonna

Journal:

BMC Structural Biology

Year:

2007

Language:

english

File:

PDF, 634 KB

english, 2007

25

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

Roberta Tarallo, Angela Bamundo, Giovanni Nassa, Ernesto Nola, Ornella Paris, Concetta Ambrosino, Angelo Facchiano, Marc Baumann, Tuula A. Nyman, Alessandro Weisz

Journal:

Year:

2011

Language:

english

File:

PDF, 264 KB

english, 2011

26

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

Roberta Tarallo, Angela Bamundo, Giovanni Nassa, Ernesto Nola, Ornella Paris, Concetta Ambrosino, Angelo Facchiano, Marc Baumann, Tuula A. Nyman, Alessandro Weisz

Journal:

PROTEOMICS - Clinical Applications

Year:

2011

Language:

english

File:

PDF, 324 KB

english, 2011

27

Effect of positive charge in VIP 16γ-glutamyl diamino derivatives on hVPAC1 and hVPAC2 receptor function

Salvatore de Maria, Vittoria Metafora, Salvatore Metafora, Gianpietro Ravagnan, Maria Cartení, Gabriele Pontoni, Angelo Facchiano, Marilena Lepretti, Beatrice Severino, Giuseppe Caliendo, Vincenzo San

Journal:

Journal of Peptide Science

Year:

2008

Language:

english

File:

PDF, 280 KB

english, 2008

28

Transglutaminase participates in the blockade of neurotransmitter release by tetanus toxin: evidence for a novel biological function

Francesco Facchiano, Florence Deloye, Frédéric Doussau, Giulio Innamorati, Anthony C. Ashton, J. Oliver Dolly, Simone Beninati, Angelo Facchiano, Alberto Luini, Bernard Poulain, Fabio Benfenati

Journal:

Year:

2010

Language:

english

File:

PDF, 656 KB

english, 2010

29

Comparing the modeled structures of PR-4 proteins from wheat

Carlo Caporale, Angelo Facchiano, Laura Bertini, Luca Leonardi, Gabriele Chilosi, Vincenzo Buonocore, Carla Caruso

Journal:

Journal of Molecular Modeling

Year:

2003

Language:

english

File:

PDF, 484 KB

english, 2003

30

Modelling of HLA-DQ2 and its interaction with gluten peptides to explain molecular recognition in celiac disease

Susan Costantini, Mauro Rossi, Giovanni Colonna, Angelo M. Facchiano

Journal:

Journal of Molecular Graphics and Modelling

Year:

2005

Language:

english

File:

PDF, 598 KB

english, 2005

31

Pyrimidine-specific ribonucleoside hydrolase from the archaeon Sulfolobus solfataricus– biochemical characterization and homology modeling

Marina Porcelli, Luigi Concilio, Iolanda Peluso, Anna Marabotti, Angelo Facchiano, Giovanna Cacciapuoti

Journal:

Year:

2008

Language:

english

File:

PDF, 925 KB

english, 2008

32

A Thermostable Sugar-Binding Protein from the Archaeon Pyrococcus horikoshii as a Probe for the Development of a Stable Fluorescence Biosensor for Diabetic Patients

Maria Staiano, MariaRosaria Sapio, Viviana Scognamiglio, Anna Marabotti, Angelo M. Facchiano, Paolo Bazzicalupo, Mose' Rossi, Sabato d'Auria

Journal:

Biotechnology Progress

Year:

2004

Language:

english

File:

PDF, 452 KB

english, 2004

33

Primary Structure of α-Globin Chains from River Buffalo (Bubalus bubalis L.) Hemoglobins

Pasquale Ferranti, Angelo Facchiano, Francesca Zappacosta, Donatella Vincenti, Rosario Rullo, Bruno Masala, Aldo Di Luccia

Journal:

The Protein Journal

Year:

2001

Language:

english

File:

PDF, 90 KB

english, 2001

34

Correlation assessment among clinical phenotypes, expression analysis and molecular modeling of 14 novel variations in the human galactose-1-phosphate uridylyltransferase gene

Manshu Tang, Angelo Facchiano, Rakesh Rachamadugu, Fernanda Calderon, Rong Mao, Luciano Milanesi, Anna Marabotti, Kent Lai

Journal:

Year:

2012

Language:

english

File:

PDF, 357 KB

english, 2012

35

Molecular properties of glutamate dehydrogenase from the extreme thermophilic archaebacterium Sulfolobus solfataricus

Angelo M. Facchiano, Raffaele Ragone, Valerio Consalvi, Roberto Scandurra, Mario De Rosa, Giovanni Colonna

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1995

Language:

english

File:

PDF, 619 KB

english, 1995

36

The application of atmospheric pressure matrix-assisted laser desorption/ionization to the analysis of long-term cryopreserved serum peptidome

Rosa Mangerini, Paolo Romano, Angelo Facchiano, Gianluca Damonte, Marco Muselli, Mattia Rocco, Francesco Boccardo, Aldo Profumo

Journal:

Analytical Biochemistry

Year:

2011

Language:

english

File:

PDF, 679 KB

english, 2011

37

When it comes to homology, bad habits die hard

Anna Marabotti, Angelo Facchiano

Journal:

Trends in Biochemical Sciences

Year:

2009

Language:

english

File:

PDF, 75 KB

english, 2009

38

Identification of a β-lactoglobulin lactosylation site

Vincenzo Fogliano, Simona M. Monti, Attilio Visconti, Giacomino Randazzo, Angelo M. Facchiano, Giovanni Colonna, Alberto Ritieni

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1998

Language:

english

File:

PDF, 233 KB

english, 1998

39

A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection

Michele Ceccarelli, Antonio d'Acierno, Angelo Facchiano

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 573 KB

english, 2009

40

Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells

Margherita Mutarelli, Luigi Cicatiello, Lorenzo Ferraro, Olì MV Grober, Maria Ravo, Angelo M Facchiano, Claudia Angelini, Alessandro Weisz

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 4.01 MB

english, 2008

41

Biochemical characterization and homology modeling of a purine-specific ribonucleoside hydrolase from the archaeon Sulfolobus solfataricus: Insights into mechanisms of protein stabilization

Marina Porcelli, Iolanda Peluso, Anna Marabotti, Angelo Facchiano, Giovanna Cacciapuoti

Journal:

Archives of Biochemistry and Biophysics

Year:

2009

Language:

english

File:

PDF, 1.31 MB

english, 2009

42

Interleukin-10 expression by real-time PCR and homology modelling analysis in the European sea bass (Dicentrarchus Labrax L.)

Francesco Buonocore, Elisa Randelli, Steve Bird, Chris J. Secombes, Angelo Facchiano, Susan Costantini, Giuseppe Scapigliati

Journal:

Year:

2007

Language:

english

File:

PDF, 803 KB

english, 2007

43

Amino acid propensities for secondary structures are influenced by the protein structural class

Susan Costantini, Giovanni Colonna, Angelo M. Facchiano

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 261 KB

english, 2006

44

Molecular modelling of miraculin: Structural analyses and functional hypotheses

Antonella Paladino, Susan Costantini, Giovanni Colonna, Angelo M. Facchiano

Journal:

Biochemical and Biophysical Research Communications

Year:

2008

Language:

english

File:

PDF, 823 KB

english, 2008

45

Functional hypothesis on miraculin’ sweetness by a molecular dynamics approach

Antonella Paladino, Giovanni Colonna, Angelo M. Facchiano, Susan Costantini

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 1.00 MB

english, 2010

46

Human aryl-hydrocarbon receptor and its interaction with dioxin and physiological ligands investigated by molecular modelling and docking simulations

Maria Salzano, Anna Marabotti, Luciano Milanesi, Angelo Facchiano

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

47

Corrigendum to “Human aryl-hydrocarbon receptor and its interaction with dioxin and physiological ligands investigated by molecular modeling and docking simulations” [Biochem. Biophys. Res. Commun. 413 (2011) 176–181]

Maria Salzano, Anna Marabotti, Luciano Milanesi, Angelo Facchiano

Journal:

Biochemical and Biophysical Research Communications

Year:

2012

Language:

english

File:

PDF, 451 KB

english, 2012

48

Prediction of the protein structural class by specific peptide frequencies

Susan Costantini, Angelo M. Facchiano

Journal:

Year:

2009

Language:

english

File:

PDF, 182 KB

english, 2009

49

Redesigning the reactive site loop of the wheat subtilisin/chymotrypsin inhibitor (WSCI) by site-directed mutagenesis. A protein–protein interaction study by affinity chromatography and molecular modeling

Natalia Bruni, Antimo Di Maro, Susan Costantini, Angela Chambery, Angelo M. Facchiano, Anna Grazia Ficca, Augusto Parente, Elia Poerio

Journal:

Year:

2009

Language:

english

File:

PDF, 445 KB

english, 2009

50

Modelling of fish interleukin-1 and its receptor

Giuseppe Scapigliati, Susan Costantini, Giovanni Colonna, Angelo Facchiano, Francesco Buonocore, Paola Bossù, Charles Cunningham, Jason W Holland, Christopher J Secombes

Journal:

Developmental & Comparative Immunology

Year:

2004

Language:

english

File:

PDF, 554 KB

english, 2004